Signals from the outside world can work through the epigenome to change a cell's gene expression.
In the activity below, you act as the signal. As you turn the control knob, epigenetic tags come and go to change the shape of the gene.
Notice what happens to the mRNA and protein levels when you manipulate the epigenetic tags on the gene. Gene, mRNA and protein production are linked. They change together.
For more information about Transcription and Translation, visit DNA to Protein.
Could You Really Do This?
Yes! Researchers at McGill University engineered a type of cell much like this one, where GFP level provided a readout of gene activity.
Researchers placed the GFP gene into cells growing in culture dishes. Then they added different compounds to the cells. They compared the amount of GFP that the cells produced before and after they added the compounds to see whether they made the gene more or less active.
A compound called AdoMet, a source of methyl tags, decreased GFP output. Valproic acid, an anti-epilepsy drug and mood stabilizer, increased GFP output. The researchers analyzed the GFP genes from these cells and confirmed that the compounds changed the number of methyl tags attached to the DNA.
Cells like this, along with other biological tools, help researchers understand how signals from the environment shape the epigenome.
In these cells, GFP production is a readout of gene activity.
Gene Control and Cancer
Cancer develops when a cell becomes abnormal and begins to grow out of control. Cancer can begin when mutation changes a cell's DNA sequence. But cancer cells also have abnormal epigenomes. In many cancers, some genes are turned up and some are turned down -- often in the very same cells.
Cancer is just one of a growing number of diseases that are being linked to abnormalities in the epigenome.
Out of control growth leads to cancer by both turning off genes coding for proteins that slow cell growth, and turning on genes coding for proteins that speed up cell growth.
- Activation of genes that promote cell growth.
- Chromosome instability: highly active DNA is more likely to be duplicated, deleted, and moved to other locations.
- Loss of imprinting (see Genomic Imprinting for a description).
- Keep cell growth in check
- Repair damaged DNA
- Initiate programmed cell death
For more information about the role of genes in cancer, visit the American Cancer Society page on Oncogenes and Tumor Suppressor Genes.
For a more in-depth description of the role of epigenetics in cancer, see
Esteller, M. (2008). Epigenetics in Cancer. New England Journal of Medicine, 358(11): 1148-1159 (subscription required)
Research articles describing experiments with GFP reporter cells:
Detich, N. et al. (2003). The Methyl Donor S-Adenosylmethionine Inhibits Active Demethylation of DNA. Journal of Biological Chemistry, 278(23): 20812-20820.
Detich, N. et al. (2003). Valproate Induces Replication-independent Active DNA Demethylation. Journal of Biological Chemistry, 278(30): 27586-27592.